Dec 16th, 2015 Ontology Working Group Meeting: Difference between revisions

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(Created page with "=Planteome Ontology WG Zoom Meeting:= Date: Wednesday Dec. 16th, 2015 Time: 8:15am PST (GMT-8) * Connection details: '''Join from PC, Mac, Linux, iOS or Android: https://zoom...")
 
 
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Time: 8:15am PST (GMT-8)
Time: 8:15am PST (GMT-8)
* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
* Attendees: LC, AM, PJ, DWS, BS
* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.


* [[File:Ontology WG meeting 12-16-2015 video.mp4|thumb|Ontology WG meeting 12-16-2015_video]]
* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a|thumb|Ontology_WG_meeting_12-16-2015_audio]]


==Updates==
==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
* Day and Time: Monday Jan 11th 5:30- 7:30pm
** need a name-  "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
** will be a "working dinner", dinner being figured out
** don't need to buy the AV equipment, will be provided
 
* Need to finalize list of invited participants
* 28 people confirmed (allowances for ~10 more)
** few people have not confirmed
** Send invites to other groups-  DivSeek, plant phenotype project project (PPPP group) and the AgBioData group (LC)
** There is a breeding API meeting scheduled at the same time, but it might be moving.
* Need to get the agenda out before Xmas, so that people who confirmed early will get a quick reminder.
 
=== Agenda: 5:30-7:30pm===
* see google doc for more precise details: https://docs.google.com/document/d/14z5zcNYe7LYWZHluoSPmZ25HJjk-eWf7fXoLzM1481Q/edit?usp=sharing
 
* Dinner:  no tables, so will do it at ~ 7pm - so that discussion can follow.
** set up dinner around 6:30
 
* APIs- still in a state of flux, but should be presentable by PAG
** Need a summary and descriptions on how to access them from planteome.org
 
* Look to get others involved in the enrichment of the TO and other reference ontologies.  Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
** external involvement is key
 
* Add an outreach page to Planteome site, (JE)
* Links to meetings and workshops and links to STEM
* Also links to community involvement tools (TermGenie)??- ''we already have a
 
==Updates on the data annotations: rice and cassava==
 
 
mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==
 
==Revisions to the Trait Ontology- biochemical branch and other changes==
   
 
==Next meeting Dec 29th, 2015==

Latest revision as of 21:27, 16 December 2015

Planteome Ontology WG Zoom Meeting:

Date: Wednesday Dec. 16th, 2015 Time: 8:15am PST (GMT-8)

Planning for PAG Workshop with CG Collaborators Monday Jan 11th

  • Day and Time: Monday Jan 11th 5:30- 7:30pm
    • need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
    • will be a "working dinner", dinner being figured out
    • don't need to buy the AV equipment, will be provided
  • Need to finalize list of invited participants
  • 28 people confirmed (allowances for ~10 more)
    • few people have not confirmed
    • Send invites to other groups- DivSeek, plant phenotype project project (PPPP group) and the AgBioData group (LC)
    • There is a breeding API meeting scheduled at the same time, but it might be moving.
  • Need to get the agenda out before Xmas, so that people who confirmed early will get a quick reminder.

Agenda: 5:30-7:30pm

  • Dinner: no tables, so will do it at ~ 7pm - so that discussion can follow.
    • set up dinner around 6:30
  • APIs- still in a state of flux, but should be presentable by PAG
    • Need a summary and descriptions on how to access them from planteome.org
  • Look to get others involved in the enrichment of the TO and other reference ontologies. Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
    • external involvement is key
  • Add an outreach page to Planteome site, (JE)
  • Links to meetings and workshops and links to STEM
  • Also links to community involvement tools (TermGenie)??- we already have a

Updates on the data annotations: rice and cassava

mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==

Revisions to the Trait Ontology- biochemical branch and other changes

Next meeting Dec 29th, 2015

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