Jan 31st, 2017 Ontology Working Group Meeting: Difference between revisions

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* Date: Tuesday Jan 30th, 201
* Date: Tuesday Jan 30th, 201
* Time: 8:15am PST (GMT-8)
* Time: 8:15am PST (GMT-8)
* Connection details: TBA
* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/729798271


* Attendees:  
* Attendees:  


* Regrets: CM,
* Regrets: CM, JD, BS


* Recordings:
* Recordings:
** [[File:Ontology WG meeting 1-31-17 video.mp4|thumbnail|Ontology WG meeting 1-31-17 video.mp4]]
** [[File:Ontology WG meeting 1-31-17 audio only.m4a|thumbnail|Ontology WG meeting 1-31-17 audio only.m4a]]


=Agenda=
=Agenda=
In progress.....
* Updates:
* Planteome Release 2.0
 




==Meeting Report: Plant and Animal Genome 2017, Jan 14-18, 2017, San Diego, CA, USA==
==Meeting Report: Plant and Animal Genome 2017, Jan 14-18, 2017, San Diego, CA, USA==
http://www.intlpag.org/
http://www.intlpag.org/
In progress.....
* LC, PJ, AM, CM  attended


* Meetings with:
** DivSeek group
** AgBioData group- established Workshop working groups in preparation of the April meeting
* Planteome at the booth, computer demo, poster


= Upcoming Meetings and Workshops=
= Upcoming Meetings and Workshops=
== Phenome 2017, Feb 10th to 14th, 2017==
== Phenome 2017, Feb 10th to 14th, 2017==
http://www.phenome2017.org/#homepage
* http://www.phenome2017.org/#homepage
* DWS will attend- evo devo presentation, submitted abstract with BtSinn and Dario
* LC submitted Planteome abstract, received a travel grant and has been invited to give a talk
* LC submitted Planteome abstract and AM submitted Samara abstract- in dropbox folder
** Details of time and session TBA
* '''To be considered for a talk you must submit your abstract by November 17, 2016'''
* AM submitted Samara abstract- will present a poster
* January 9, 2017: Final deadline for abstracts to be in the online program and conference mobile app
* DWS and BtSinn decided not to attend
* Early bird registrations till Dec. 1st- [https://ww2.eventrebels.com/er/Registration/StepRegInfo.jsp?ActivityID=18283&StepNumber=1 Registration Link]


==Biocuration 2017, March 26-29, 2017==
==Biocuration 2017, March 26-29, 2017==
* Stanford University, Palo Alto, California, United States
* Stanford University, Palo Alto, California, United States
* http://biocuration2017.org
* http://biocuration2017.org
* Call for Workshops:
* Upcoming deadlines:
** Submission deadline: November 11, 2016
* Abstract submission for poster ONLY February 17, 2017
* Early conference registration February 17, 2017
* Online conference registration March 10, 2017
** Submission email: biocuration2017@lists.stanford.edu
** Submission email: biocuration2017@lists.stanford.edu


* Biocuration 2017 will bring together hundreds of leading curation scientists, bioinformaticians, and developers from all over the world to discuss their work, promote collaboration and foster a sense of community in this very active and growing area of research.
* Biocuration 2017 will bring together hundreds of leading curation scientists, bioinformaticians, and developers from all over the world to discuss their work, promote collaboration and foster a sense of community in this very active and growing area of research.


* The purpose of a workshop is to provide an opportunity for participants from academia and industry to present and discuss novel ideas on current and emerging topics relevant to biocuration. Workshops are an excellent forum for exploring emerging approaches and task areas, for bridging the gaps between the curation and technology subfields of biocuration, and for critiquing existing approaches. This is a great opportunity to discuss specific topics with so many colleagues and working scientists gathered in the same location.
== 2017 Gene Ontology Consortium Meeting, June 1-5th, 2017, Corvallis ==
* [https://sites.google.com/s/0BxnW-HvvUL8iMkM5VmxxWTBsYzg/p/0BxnW-HvvUL8iRnB0S1dtYUJXYUE/edit GO Meeting Corvallis]
* [https://docs.google.com/forms/d/1cJWCL0mL3X3rXrNsIcmLtkAf9et6TfhyYbHX9ouLwZs/edit Registration]
* [https://docs.google.com/forms/d/1F9BUTwzPqeyYQW81BXY1Qfj63OwCwWj9e0zC6sTt2jk/edit Travel plans]


* For the best opportunity for consideration, proposals should be received by November 11, 2016.  Please submit a short paragraph (or two) describing the following:
* Dates: June 1-5, 2017 (Details)
** Proposed scope and main objective, and their relation to biocuration
** Arrive (May 31) View travel directions
** Brief discussion of why the topic is of particular interest at this time
** GOC meeting (June 1-3)
** Suggested format (talks, panel discussion, etc.)
** Noctua gene annotation jamboree (June 4)
** Potential speakers, panels, or other activities
** Reactome Pathway curation jamboree (June 5)
** Depart (June 5 late evening / June 6 anytime)


== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==
== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==
Workshop proposal accepted
* Workshop proposal accepted-
 
* T5-06:Ontologizing botanical knowledge (two sessions)
** Organizer:  Hong Cui (University of Arizona, USA)
** James Macklin (Agriculture Agri-Food Canada, Canada)
** Pankaj Jaiswal (Oregon State University, USA)
 
* T5-18: Bioinformatics resources for comparative functional and phylogenetic analysis of plant genomes, pathways and diversity
** Organizer:Pankaj Jaiswal (Oregon State University, USA)
** Sushma Naithani (Oregon State University, USA)
 
* Deadline for the abstract submission for oral presentations has been extended for 39 of the 212 [http://www.ibc2017.cn/Symposia/ general symposia] where one or a few speaker slots are available 
* New deadline: February 15, 2017 for those 39 symposia and for posters only
 
* Abstract submitted? Not yet


==ICBO 2017, Sept 12th-15th, 2017==
==ICBO 2017, Sept 12th-15th, 2017==
* Newcastle, GB
* Newcastle, GB
* http://icbo.buffalo.edu/
* http://icbo.buffalo.edu/
* Important dates:
** Mar 29, 2017: Workshops and tutorials proposals submission deadline
** Apr 19, 2017: Notification of acceptance of workshops and tutorials
** Jun 02, 2017: Paper and Poster Deadline
** Jun 16, 2017: Paper Reviews Due

Latest revision as of 19:00, 31 January 2017

Planteome Ontology WG Zoom Meeting

  • Date: Tuesday Jan 30th, 201
  • Time: 8:15am PST (GMT-8)
  • Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/729798271
  • Attendees:
  • Regrets: CM, JD, BS

Agenda

  • Updates:
  • Planteome Release 2.0


Meeting Report: Plant and Animal Genome 2017, Jan 14-18, 2017, San Diego, CA, USA

http://www.intlpag.org/

  • LC, PJ, AM, CM attended
  • Meetings with:
    • DivSeek group
    • AgBioData group- established Workshop working groups in preparation of the April meeting
  • Planteome at the booth, computer demo, poster

Upcoming Meetings and Workshops

Phenome 2017, Feb 10th to 14th, 2017

  • http://www.phenome2017.org/#homepage
  • LC submitted Planteome abstract, received a travel grant and has been invited to give a talk
    • Details of time and session TBA
  • AM submitted Samara abstract- will present a poster
  • DWS and BtSinn decided not to attend

Biocuration 2017, March 26-29, 2017

  • Stanford University, Palo Alto, California, United States
  • http://biocuration2017.org
  • Upcoming deadlines:
  • Abstract submission for poster ONLY February 17, 2017
  • Early conference registration February 17, 2017
  • Online conference registration March 10, 2017
    • Submission email: biocuration2017@lists.stanford.edu
  • Biocuration 2017 will bring together hundreds of leading curation scientists, bioinformaticians, and developers from all over the world to discuss their work, promote collaboration and foster a sense of community in this very active and growing area of research.

2017 Gene Ontology Consortium Meeting, June 1-5th, 2017, Corvallis

  • Dates: June 1-5, 2017 (Details)
    • Arrive (May 31) View travel directions
    • GOC meeting (June 1-3)
    • Noctua gene annotation jamboree (June 4)
    • Reactome Pathway curation jamboree (June 5)
    • Depart (June 5 late evening / June 6 anytime)

XIX International Botanical Congress, July 23-29, 2017, Shenzhen, China

  • Workshop proposal accepted-
  • T5-06:Ontologizing botanical knowledge (two sessions)
    • Organizer: Hong Cui (University of Arizona, USA)
    • James Macklin (Agriculture Agri-Food Canada, Canada)
    • Pankaj Jaiswal (Oregon State University, USA)
  • T5-18: Bioinformatics resources for comparative functional and phylogenetic analysis of plant genomes, pathways and diversity
    • Organizer:Pankaj Jaiswal (Oregon State University, USA)
    • Sushma Naithani (Oregon State University, USA)
  • Deadline for the abstract submission for oral presentations has been extended for 39 of the 212 general symposia where one or a few speaker slots are available
  • New deadline: February 15, 2017 for those 39 symposia and for posters only
  • Abstract submitted? Not yet

ICBO 2017, Sept 12th-15th, 2017

  • Newcastle, GB
  • http://icbo.buffalo.edu/
  • Important dates:
    • Mar 29, 2017: Workshops and tutorials proposals submission deadline
    • Apr 19, 2017: Notification of acceptance of workshops and tutorials
    • Jun 02, 2017: Paper and Poster Deadline
    • Jun 16, 2017: Paper Reviews Due
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