Dec 16th, 2015 Ontology Working Group Meeting: Difference between revisions

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* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.
* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.


* [[File:Ontology WG meeting 12-16-2015 video.mp4|thumb|Ontology WG meeting 12-16-2015_video]]
* [[File:Ontology WG meeting 12-16-2015 video.mp4|thumb|Ontology WG meeting 12-16-2015_video]]
* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a|thumb|Ontology_WG_meeting_12-16-2015_audio]]
* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a|thumb|Ontology_WG_meeting_12-16-2015_audio]]


==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
* Day and Time: Monday Jan 11th 5:30- 7:30pm
** need a name-  "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
** will be a "working dinner", dinner being figured out
** don't need to buy the AV equipment, will be provided
 
* Need to finalize list of invited participants
* 28 people confirmed (allowances for ~10 more)
** few people have not confirmed
** Send invites to other groups-  DivSeek, plant phenotype project project (PPPP group) and the AgBioData group (LC)
** There is a breeding API meeting scheduled at the same time, but it might be moving.
* Need to get the agenda out before Xmas, so that people who confirmed early will get a quick reminder.


=== Agenda: 5:30-7:30pm===
* see google doc for more precise details: https://docs.google.com/document/d/14z5zcNYe7LYWZHluoSPmZ25HJjk-eWf7fXoLzM1481Q/edit?usp=sharing


==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
* Dinner:  no tables, so will do it at ~ 7pm - so that discussion can follow.
* PAG workshop (Monday Jan 11th 5:30- 7:30pm)
** set up dinner around 6:30
  - don't need to buy the AV equipment, will be provided
  - need a name
    "Planteome collaborators workshop, PAG 2016"
    - "working dinner"
      - dinner being figured out
    - not all curators coming, so it's not a "curator workshop"
  - need to finalize list of invited participants
    - few people have not confirmed
    - There is a breeding API meeting scheduled at the same time, but it might be moving.
    - want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.
 
* Agenda: 5:30-7:30
    - 28 people confirmed (allowances for ~10 more)
      - invite the plant phenotype project people (PPPP group) and the AgBioData group
    - see google doc for more precise
  - Dinner:  no tables, so what time to do dinner?
    - 7- so that discussion can follow.
      - set up dinner around 6:30


* APIs- still in a state of flux, but should be presentable by PAG
* APIs- still in a state of flux, but should be presentable by PAG
  - Summary descriptions on how to access them from planteome.org
** Need a summary and descriptions on how to access them from planteome.org


* Look to get others involved in the enrichment of the TO and other reference ontologies.  Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
* Look to get others involved in the enrichment of the TO and other reference ontologies.  Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
  - external involvement is key
** external involvement is key


* Add an outreach page, with links to community involvement tools (TermGenie)
* Add an outreach page to Planteome site, (JE)
    - also with links to meetings and workshops
* Links to meetings and workshops and links to STEM  
    - and links to STEM stuff
* Also links to community involvement tools (TermGenie)??- ''we already have a


==Updates on the data annotations: rice and cassava==
==Updates on the data annotations: rice and cassava==

Latest revision as of 21:27, 16 December 2015

Planteome Ontology WG Zoom Meeting:

Date: Wednesday Dec. 16th, 2015 Time: 8:15am PST (GMT-8)

Planning for PAG Workshop with CG Collaborators Monday Jan 11th

  • Day and Time: Monday Jan 11th 5:30- 7:30pm
    • need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
    • will be a "working dinner", dinner being figured out
    • don't need to buy the AV equipment, will be provided
  • Need to finalize list of invited participants
  • 28 people confirmed (allowances for ~10 more)
    • few people have not confirmed
    • Send invites to other groups- DivSeek, plant phenotype project project (PPPP group) and the AgBioData group (LC)
    • There is a breeding API meeting scheduled at the same time, but it might be moving.
  • Need to get the agenda out before Xmas, so that people who confirmed early will get a quick reminder.

Agenda: 5:30-7:30pm

  • Dinner: no tables, so will do it at ~ 7pm - so that discussion can follow.
    • set up dinner around 6:30
  • APIs- still in a state of flux, but should be presentable by PAG
    • Need a summary and descriptions on how to access them from planteome.org
  • Look to get others involved in the enrichment of the TO and other reference ontologies. Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
    • external involvement is key
  • Add an outreach page to Planteome site, (JE)
  • Links to meetings and workshops and links to STEM
  • Also links to community involvement tools (TermGenie)??- we already have a

Updates on the data annotations: rice and cassava

mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==

Revisions to the Trait Ontology- biochemical branch and other changes

Next meeting Dec 29th, 2015

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