Sept 27th, 2016 Ontology Working Group Meeting - Revision history

Cooperl: /* Comments and Discussion */

2017-02-07T21:43:17Z

Comments and Discussion

← Older revision		Revision as of 21:43, 7 February 2017
Line 30:		Line 30:
	=== Comments and Discussion ===		=== Comments and Discussion ===
	* Planteome site:		* Planteome site:
	** BS: Need a diagram or graphic that shows the relationship between the TO, the PO and the CO species- would add graphic appeal ~~tot he~~ webpage		** BS: Need a diagram or graphic that shows the relationship between the TO, the PO and the CO species- would add graphic appeal to the webpage
	** PJ: From GODAN, People not aware of what an ontology is- should create a short video (can start with ppts); also need a new theme for the website- will work with JE on		** PJ: From GODAN, People not aware of what an ontology is- should create a short video (can start with ppts); also need a new theme for the website- will work with JE on

2016-10-05T21:13:45Z

← Older revision		Revision as of 21:13, 5 October 2016
Line 112:		Line 112:

	= Upcoming Meetings and Workshops=		= Upcoming Meetings and Workshops=


	==IC-FOODS Conference November 7-9,2016 Davis, California ==		==IC-FOODS Conference November 7-9,2016 Davis, California ==
	* http://www.ic-foods.org/conference		* http://www.ic-foods.org/conference

2016-09-27T18:43:38Z

Marie-Angelique visits in Corvallis for next five weeks

← Older revision		Revision as of 18:43, 27 September 2016
Line 76:		Line 76:
	** write a brief paper about mapping traits to the TO, expand on MAL's ICBO proceedings paper		** write a brief paper about mapping traits to the TO, expand on MAL's ICBO proceedings paper
	** Goal: try and get a draft done while MAL is stateside		** Goal: try and get a draft done while MAL is stateside

			* Samara tool for web scraping: https://github.com/jhpoelen/samara
			** Using for scraping the GRIN Global data and Yorik
			** Yorik is contracted to help with the APS scrape

	== Recent meetings and Conferences==		== Recent meetings and Conferences==

2016-09-27T18:35:22Z

Comments from NSF meeting

← Older revision		Revision as of 18:35, 27 September 2016
Line 55:		Line 55:
	** LC will send out template from last year		** LC will send out template from last year
	** Need paragraph of accomplishments since last year; list of people on the project, monthly hour commitment etc		** Need paragraph of accomplishments since last year; list of people on the project, monthly hour commitment etc

			* NSF wants to see community engagement
			** PJ: contracted with private company, Sanmita Inc, to create an app or online data submission platform for freelance curation and to maintain their own gene nomenclature
			** Compare with functionalities of Noctua tool from GO

	== Marie-Angelique visits in Corvallis for next five weeks ==		== Marie-Angelique visits in Corvallis for next five weeks ==

2016-09-27T18:32:38Z

Marie-Angelique visits in Corvallis for next five weeks

← Older revision		Revision as of 18:32, 27 September 2016
Line 72:		Line 72:
	** write a brief paper about mapping traits to the TO, expand on MAL's ICBO proceedings paper		** write a brief paper about mapping traits to the TO, expand on MAL's ICBO proceedings paper
	** Goal: try and get a draft done while MAL is stateside		** Goal: try and get a draft done while MAL is stateside

	*

	== Recent meetings and Conferences==		== Recent meetings and Conferences==

2016-09-27T18:27:18Z

Comments and Discussion

← Older revision		Revision as of 18:27, 27 September 2016
Line 36:		Line 36:
	** product manufacturing core, future extension to the Ag Industry		** product manufacturing core, future extension to the Ag Industry
	** suggests adding farmer friendly terms to the TO as synonyms- a "farmer slim" ?		** suggests adding farmer friendly terms to the TO as synonyms- a "farmer slim" ?

			* for next release, need to update the datasets, do incremental releases

	===Comments from NSF meeting===		===Comments from NSF meeting===

2016-09-27T18:26:07Z

Comments from NSF meeting

← Older revision		Revision as of 18:26, 27 September 2016
Line 48:		Line 48:
	* Example traits from PJ presentation eg: aerenchyma formation under drought to remobilize carbon		* Example traits from PJ presentation eg: aerenchyma formation under drought to remobilize carbon
	** New program manager is from modelling - AGMIP		** New program manager is from modelling - AGMIP
	** NSF want to see how we fit in with the modelling community		** NSF want to see how we fit in with the modelling community- need list of traits to start modelling

	* NSF Annual report now due:		* NSF Annual report now due:

2016-09-27T18:16:45Z

Phenome 2017, Feb 10th to 14th, 2017

← Older revision		Revision as of 18:16, 27 September 2016
Line 124:		Line 124:
	== Phenome 2017, Feb 10th to 14th, 2017==		== Phenome 2017, Feb 10th to 14th, 2017==
	http://www.phenome2017.org/#homepage		http://www.phenome2017.org/#homepage
			* DWS will attend- evo devo presentation
			* CM will attend and present Planteome and pheno-BLASTing

	== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==		== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==
	Workshop proposal accepted		Workshop proposal accepted

2016-09-27T18:15:16Z

IC-FOODS Conference November 7-9,2016 Davis, California

← Older revision		Revision as of 18:15, 27 September 2016
Line 108:		Line 108:
	==IC-FOODS Conference November 7-9,2016 Davis, California ==		==IC-FOODS Conference November 7-9,2016 Davis, California ==
	* http://www.ic-foods.org/conference		* http://www.ic-foods.org/conference
	* Matthew Lange is organizing		* Matthew Lange is organizing
			* BS cannot attend, will be at ISO meeting in Europe
			* MAL and PJ will atend

	== 4th International Plant Phenotyping Symposium, CIMMYT, December 13 – 15, 2016 ==		== 4th International Plant Phenotyping Symposium, CIMMYT, December 13 – 15, 2016 ==

2016-09-27T18:14:26Z

Recent meetings and Conferences

← Older revision		Revision as of 18:14, 27 September 2016
Line 75:		Line 75:
	== Recent meetings and Conferences==		== Recent meetings and Conferences==
	===NSF meeting Sept 7-8th, 2016===		===NSF meeting Sept 7-8th, 2016===
	* PJ attended, presented Planteome		* PJ attended, presented Planteome- see notes above

	=== GODAN Summit, New York City, Sept 15-16th, 2016 ===		=== GODAN Summit, New York City, Sept 15-16th, 2016 ===
Line 94:		Line 94:
	** Ruth Bastow		** Ruth Bastow
	** others?		** others?
	* ~~LC will draft a letter and discuss with PJ~~
			* ''DWS: Suggested David Spooner, USDA potato researcher''
	* Goals review progress, help improve, recommend us to funders		* Goals review progress, help improve, recommend us to funders
	* Could have a meeting with them at the fall ~~workshop~~		* Could have a half day online meeting with them later in the fall, maybe could also meet at PAG

	== Other items?==		== Other items?==