Planteome Image Annotation Working Group - Revision history

Preecej: /* Planteome Dev Meeting - 13 Apr 2017 */

2017-04-13T18:36:43Z

Planteome Dev Meeting - 13 Apr 2017

← Older revision		Revision as of 18:36, 13 April 2017
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	*''Todorovic Group (OSU, EECS):'' DT		*''Todorovic Group (OSU, EECS):'' DT

	'''Progress'''		'''DT Progress'''
	* Desktop image classification tool: ready for internal testing and use to aggregate annotation data for machine learning adding bounding boxes		* Desktop image classification tool: ready for internal testing and use to aggregate annotation data for machine learning adding bounding boxes
			** prepped and provided zip archive of test files for testers
	* Machine learning: currently refining parametrics for back-propogation; no network convergence as of yet, but improvement using botanical training data sets from [[http://www.imageclef.org/2013 ImageClef]]		* Machine learning: currently refining parametrics for back-propogation; no network convergence as of yet, but improvement using botanical training data sets from [[http://www.imageclef.org/2013 ImageClef]]
	* Bisque: image classification prediction module is running on local Dev with a sample machine-learning network		* Bisque: image classification prediction module is running on local Dev with a sample machine-learning network

Preecej: /* Planteome Dev Group Status Meeting - 14 July 2016 */

2017-04-13T18:07:09Z

Planteome Dev Group Status Meeting - 14 July 2016

@@ Line 525: / Line 525: @@
 '''Next Steps'''
 =Conferences and Workshops=
 Please see: [[Planteome_Outreach]]

Preecej: /* Planteome Dev Group Weekly Meeting - 11 May 2016 */

2016-07-14T20:21:23Z

Planteome Dev Group Weekly Meeting - 11 May 2016

@@ Line 496: / Line 496: @@
 * XX: modify Matlab code to expect two collections of polylines from the client (one fg, one bg)
 * JP: document ontology use-case and draft design for KK and Bisque group; share API examples
 =Conferences and Workshops=
 Please see: [[Planteome_Outreach]]

Preecej: /* Planteome Dev Group Weekly Meeting - 2 Mar 2016 */

2016-05-11T20:13:20Z

Planteome Dev Group Weekly Meeting - 2 Mar 2016

@@ Line 474: / Line 474: @@
 * RK: Bisque engine config issues; get the modules running
 * DT: client UI - fg/bg marks in JS override
 * XX: modify Matlab code to expect two collections of polylines from the client (one fg, one bg)
 * JP: document ontology use-case and draft design for KK and Bisque group; share API examples

Preecej: /* Planteome Dev Group Weekly Meeting - 17 Feb 2016 */

2016-03-02T20:57:18Z

Planteome Dev Group Weekly Meeting - 17 Feb 2016

@@ Line 408: / Line 408: @@
 '''Attendees'''
 *''Jaiswal Lab (OSU, BPP):'' JP
 *''Todorovic Group (OSU, EECS):'' XX, DT
@@ Line 428: / Line 427: @@
 * XX: validate for at least one of each FG/BG mark
 * JP: confirm Term Search record format, begin designing ontology annotation Bisque UI and record format with KK
 =Conferences and Workshops=
 Please see: [[Planteome_Outreach]]

Preecej: /* Planteome Dev Group Weekly Meeting - 10 Feb 2016 */

2016-02-17T20:34:26Z

Planteome Dev Group Weekly Meeting - 10 Feb 2016

@@ Line 404: / Line 404: @@
 * RK: re-brand all module files to PlanteomeSegmenter namespace
 * XX: modify Matlab scripts to accept 1-to-many foreground and background polylines, and validate for at least one of each
 =Conferences and Workshops=
 Please see: [[Planteome_Outreach]]

Preecej: /* Planteome Dev Group Weekly Meeting - 10 Feb 2016 */

2016-02-10T21:16:58Z

Planteome Dev Group Weekly Meeting - 10 Feb 2016

← Older revision		Revision as of 21:16, 10 February 2016
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	*''Jaiswal Lab (OSU, BPP):'' Justin Preece, Justin Elser		*''Jaiswal Lab (OSU, BPP):'' Justin Preece, Justin Elser
	*''Todorovic Group (OSU, EECS):'' Xu Xu, Ryan Kitchen		*''Todorovic Group (OSU, EECS):'' Xu Xu, Ryan Kitchen

	~~'''Issues'''~~
	* Test Server stability: bisque-dev.planteome.org went down a couple of days ago; cause unknown; RK looking into it

	'''Progress'''		'''Progress'''
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	* JP changed module folder name from TestModule2 to PlanteomeSegmenter		* JP changed module folder name from TestModule2 to PlanteomeSegmenter
	* SC: Ontology Service API: Term Search under develeopment (JP will follow up)		* SC: Ontology Service API: Term Search under develeopment (JP will follow up)

			'''Issues'''
			* Test Server stability: bisque-dev.planteome.org went down a couple of days ago; cause unknown; RK looking into it

	'''Next Steps'''		'''Next Steps'''

Preecej: /* Planteome Dev Group Weekly Meeting - 10 Feb 2016 */

2016-02-10T21:13:47Z

Planteome Dev Group Weekly Meeting - 10 Feb 2016

← Older revision		Revision as of 21:13, 10 February 2016
Line 391:		Line 391:

	'''Progress'''		'''Progress'''
	* all Dev servers running engine and client, and are returning results from existing registered modules		* RK/DT/XX: all Dev servers running engine and client, and are returning results from existing registered modules
	* group met with KK and debugged our Bisque test server; it is now running (although crashes occasionally)		* group met with KK and debugged our Bisque test server; it is now running (although crashes occasionally)
	** main changes: Apache config proxy rewrites (ProxyPreserveHost); other Bisque config changes		** main changes: Apache config proxy rewrites (ProxyPreserveHost); other Bisque config changes
	* all developers have user accounts on the Bisque test server		* all developers have user accounts on the Bisque test server
	* JP changed module folder name from TestModule2 to PlanteomeSegmenter		* JP changed module folder name from TestModule2 to PlanteomeSegmenter
	* Ontology Service API: Term Search under develeopment ~~with SC~~		* SC: Ontology Service API: Term Search under develeopment (JP will follow up)

	'''Next Steps'''		'''Next Steps'''
	* JP: confirm Term Search record format, ~~design~~ ontology annotation		* JP: confirm Term Search record format, begin designing ontology annotation Bisque UI and record format with KK
	* RK/DT: client UI - fg/bg marks in JS override? (check with KK)		* RK/DT: client UI - fg/bg marks in JS override? (check with KK)
	* JE/RK: git sparse to properly place our git module on palea; pls confirm round-trip commit back to github		* JE/RK: git sparse to properly place our git module on palea; pls confirm round-trip commit back to github
			* RK: re-brand all module files to PlanteomeSegmenter namespace
			* XX: modify Matlab scripts to accept 1-to-many foreground and background polylines, and validate for at least one of each

	=Conferences and Workshops=		=Conferences and Workshops=
	Please see: [[Planteome_Outreach]]		Please see: [[Planteome_Outreach]]

Preecej: /* Planteome Dev Group Weekly Meeting - 10 Feb 2016 */

2016-02-10T21:06:13Z

Planteome Dev Group Weekly Meeting - 10 Feb 2016

← Older revision		Revision as of 21:06, 10 February 2016
Line 392:		Line 392:
	'''Progress'''		'''Progress'''
	* all Dev servers running engine and client, and are returning results from existing registered modules		* all Dev servers running engine and client, and are returning results from existing registered modules
	* group met with KK and debugged our Bisque test server; it is now running		* group met with KK and debugged our Bisque test server; it is now running (although crashes occasionally)
			** main changes: Apache config proxy rewrites (ProxyPreserveHost); other Bisque config changes
	* all developers have user accounts on the Bisque test server		* all developers have user accounts on the Bisque test server
	* JP changed module folder name from TestModule2 to PlanteomeSegmenter		* JP changed module folder name from TestModule2 to PlanteomeSegmenter
			* Ontology Service API: Term Search under develeopment with SC

			'''Next Steps'''
			* JP: confirm Term Search record format, design ontology annotation
			* RK/DT: client UI - fg/bg marks in JS override? (check with KK)
			* JE/RK: git sparse to properly place our git module on palea; pls confirm round-trip commit back to github

	=Conferences and Workshops=		=Conferences and Workshops=
	Please see: [[Planteome_Outreach]]		Please see: [[Planteome_Outreach]]

Preecej: /* PIA Working Group Bi-Weekly Conf Call: Wed, Sep 9, 3p PT */

2016-02-10T20:36:26Z

PIA Working Group Bi-Weekly Conf Call: Wed, Sep 9, 3p PT

@@ Line 379: / Line 379: @@
 * Define integration points between client and server software - RK, XX
+:
 =Conferences and Workshops=
 Please see: [[Planteome_Outreach]]