Oct 17th, 2017 Ontology Working Group Meeting - Revision history

Cooperl: /* TO DO: */

2017-10-20T22:58:24Z

TO DO:

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	==TO DO:==		==TO DO:==
	* Create folders for Planteome papers:		* Create folders for Planteome papers: https://drive.google.com/drive/folders/0B71O1Y7eIKhsQ3VtTDhqTkxRUnM?usp=sharing
	** TO paper with mapping to CO vocabs		** TO paper with mapping to CO vocabs
	** Samara papers- see: https://docs.google.com/document/d/1p5PUqXnPQWlFYKHH5yJtbPpRcOnX0AsuGRj7M_2HxAk/edit		** Samara papers- see: https://docs.google.com/document/d/1p5PUqXnPQWlFYKHH5yJtbPpRcOnX0AsuGRj7M_2HxAk/edit

2017-10-20T22:35:55Z

Planning for Planteome renewal

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	* What can the users get from the resource, machine learning		* What can the users get from the resource, machine learning
	* Submit by spring, PGP may not exist down the road		* Submit by spring, PGP may not exist down the road
			** Link to Google Folder: https://drive.google.com/drive/folders/0B71O1Y7eIKhsanJmUk9uaGEwMnM?usp=sharing

	==TO DO:==		==TO DO:==

2017-10-20T21:56:05Z

Phenoscape Hackathon in Dec:

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	==Phenoscape Hackathon in Dec:==		==Phenoscape Hackathon in Dec:==
	* https://blog.phenoscape.org/		* https://blog.phenoscape.org/
	* LC,and AM planning to attend, JE and CM ~~maybe~~ attend		* LC and AM planning to attend, JE and CM may attend?
	* What other plant people going- who?		* What other plant people going- who?
			** ''Lorena Endara will be attending, collaborator with Hong Cui''
			** Others?
	* Maybe Hilmar could come on a future call and show us an overview?		* Maybe Hilmar could come on a future call and show us an overview?
	* there was an experimental plant phenoscape- what is plant community looking for		* there was an experimental plant phenoscape- what is plant community looking for
	* Can we get a list of the attendees?		* Can we get a list of the attendees?

	==Items from the NAR Review:==		==Items from the NAR Review:==
	* Question about the filters:		* Question about the filters:

2017-10-20T21:52:41Z

Second paper on the Samara work

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	CM, AM, LC with MAL- had discussions with the consultant Jorrit- see the gdoc:		CM, AM, LC with MAL- had discussions with the consultant Jorrit- see the gdoc:
	[https://docs.google.com/document/d/1p5PUqXnPQWlFYKHH5yJtbPpRcOnX0AsuGRj7M_2HxAk/edit Planteome Term Matcher]		[https://docs.google.com/document/d/1p5PUqXnPQWlFYKHH5yJtbPpRcOnX0AsuGRj7M_2HxAk/edit Planteome Term Matcher]

	~~AM has an email from Jorrit - asked him to share it with the group, or at least me~~

	Mapping the trait descriptors to the TO, sort of overlaps with what Marie has been doing, so we need to sort that out		Mapping the trait descriptors to the TO, sort of overlaps with what Marie has been doing, so we need to sort that out

2017-10-18T22:26:35Z

Items from the NAR Review:

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	* ''I think the reviewer misunderstood this...''		* ''I think the reviewer misunderstood this...''

	* Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.		- Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.
	** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3		** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3

2017-10-18T22:26:08Z

Items from the NAR Review:

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	** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3		** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3

	'''* PJ: Need to update the Planteome website'~~''''Italic text~~''		'''* PJ: Need to update the Planteome website'''

	==Upcoming Events==		==Upcoming Events==

2017-10-18T22:25:44Z

Need to update the Planteome website

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	** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3		** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3

	==Need to update the Planteome website==		'''* PJ: Need to update the Planteome website'''''Italic text''

	==Upcoming Events==		==Upcoming Events==

2017-10-18T22:24:59Z

Planning for Release in December

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	==Need to update the Planteome website==		==Need to update the Planteome website==

	~~==Planning for Release in December==~~

	==Upcoming Events==		==Upcoming Events==

2017-10-18T22:24:45Z

Items from the NAR Review:

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	* Question about the filters:		* Question about the filters:
	- Page 6 line 21: the fact that filters must be set before browsing the tree is a limitation of the current implementation that should indeed be documented, but on the web site, not on this paper. This latter one should remain fully relevant even after correction of this kind of little limitations. Same with line 33 with the space at the end trick.		- Page 6 line 21: the fact that filters must be set before browsing the tree is a limitation of the current implementation that should indeed be documented, but on the web site, not on this paper. This latter one should remain fully relevant even after correction of this kind of little limitations. Same with line 33 with the space at the end trick.
	** ''I think the reviewer misunderstood this...''		* ''I think the reviewer misunderstood this...''

	* Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.		* Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.

2017-10-18T22:24:33Z

Items from the NAR Review:

← Older revision		Revision as of 22:24, 18 October 2017
Line 157:		Line 157:
	** ''I think the reviewer misunderstood this...''		** ''I think the reviewer misunderstood this...''

	** Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.		* Page 7: the swagger include examples of human genes. it would be nice to have examples with plant genes. No impact on the paper though.
	** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3		** CM opened a tracker for it: https://github.com/Planteome/biolink-api/issues/3