Nov 29th, 2016 Ontology Working Group Meeting - Revision history

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-20T00:03:33Z

Fruit types in the Plant Ontology

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	** [https://drive.google.com/open?id=0Bx1a3gacds0DTnJjcnZnSXBELUE Fruit images]		** [https://drive.google.com/open?id=0Bx1a3gacds0DTnJjcnZnSXBELUE Fruit images]

			* drupe fruit (PO:0030103): A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity comprises a fleshy exocarp (PO:0009085), fleshy mesocarp (PO:0009087), and a stony endocarp (PO:0009086).
			** Synonym: steinfrucht (exact, German), drupa (exact, Spanish), stone fruit (exact), drupe (exact), indehiscent fruit (broad)
			**Comment: May develop from an inferior or superior carpel (PO:0009030) and may contain one or more seeds (PO:0009010). Examples: Amborella trichopoda (basal angiosperm), coffee (Coffea canephora), Cornaceae (Davidia spp.), cashew (Anacardium occidentale), coconut (Cocos nucifera), and almond, peach and plum (Prunus spp.).

			* berry fruit (PO:0030108): A fruit (PO:0009001) which at maturity comprises a fleshy endocarp (PO:0009086), fleshy mesocarp (PO:0009087), and fleshy exocarp (PO:0009085).
			** Synonym: beere (exact, German), baya (exact, Spanish), bacca (exact), berry (exact), indehiscent fruit (broad)
			** Comment:
			** Examples: pepper (Capsicum annuum), papaya (Carica papaya), apple (Malus domestica), banana (Musa acuminata), avocado (Persea americana), may apple (Podophyllum peltatum), date palm (Phoenix dactylifera), tomato (Solanum lycopersicum), potato (Solanum tuberosum), chocolate (Theobroma cacao), blueberry (Vaccinium spp.), and grape (Vitis vinifera).

			* pepo fruit (PO:0030111): A berry fruit (PO:0030108) which develops from an inferior carpel (PO:0009030) and at maturity comprises a fleshy exocarp (PO:0009085), fleshy mesocarp (PO:0009087), and fleshy endocarp (PO:0009086), and has as a part a hard receptacle (PO:0009064) which surrounds, and is indistinct from, the exocarp (PO:0009085).
			** Synonym: kürbisfrucht (exact, German), panzerbeere (broad, German), pepónide (exact, Spanish), pepo (exact), indehiscent fruit (broad)
			** Comment: A pepo fruit (PO:0030111) is specialized type of berry fruit (PO:0030108) which is encapsuled by persistent, accrescent receptacle (PO:0009064) tissue. The rind, or tough outer covering, of pepo fruits comprises receptacle tissue and at least the exocarp (PO:0009085) layer of the pericarp (PO:0009084).
			** Examples: pumpkin (Cucurbita pepo), cucumber (Cucumis sativus), and watermelon (Citrullus lanatus).

			* pome fruit (PO:0030110): A berry fruit (PO:0030108) which develops from an inferior gynoecium (PO:0009062) and at maturity comprises a fleshy exocarp (PO:0009085), fleshy mesocarp (PO:0009087), and hardened endocarp (PO:0009086) and has as a part a fleshy hypanthium (PO:0009065) which is indistinct from the exocarp (PO:0009085).
			** Synonym: pome (exact), kernfrucht (exact, German), kernobst (exact, German), apfelfrucht (exact, German), pomo (exact, Spanish), indehiscent fruit (broad)
			** Comment: A pome fruit (PO:0030110) is a specialized type of berry fruit (PO:0030108) which is encapsuled in persistent, accrescent receptacle (PO:0009064) and/or hypanthium (PO:0009065) tissue.
			** Examples: Apple, crab apple, and pear (Malus spp. and Pyrus spp.)

			* hesperidium fruit (PO:0030109): A berry fruit (PO:0030108) which develops from a superior gynoecium (PO:0009062) and at maturity comprises a thickened exocarp (PO:0009085), thickened mesocarp (PO:0009087), and endocarp (PO:0009086), and has as parts juice sacs (PO:0006013) on a carpel adaxial epidermis (PO:0025618).
			** Synonyms: panzerbeere (broad, German), hesperidio (exact, Spanish), citrus fruit (exact), hesperidium (exact), indehiscent fruit (broad)
			** Comment: A hesperidium fruit (PO:0030109) develops from a superior gynoecium (PO:0009062), and therefore is not surrounded by receptacle (PO:0009064) tissue.
			** Examples: orange, grapefruit, lemon, and lime (Citrus spp.).

	* The main categories of fruits will be (see the associated trackers for each):		* The main categories of fruits will be (see the associated trackers for each):

Cooperl: /* Biocuration 2017, March 26-29, 2017 */

2016-12-01T21:20:47Z

Biocuration 2017, March 26-29, 2017

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	* For the best opportunity for consideration, proposals should be received by November 11, 2016. Please submit a short paragraph (or two) describing the following:		* For the best opportunity for consideration, proposals should be received by November 11, 2016. Please submit a short paragraph (or two) describing the following:
			** Proposed scope and main objective, and their relation to biocuration
	* Proposed scope and main objective, and their relation to biocuration		** Brief discussion of why the topic is of particular interest at this time
	* Brief discussion of why the topic is of particular interest at this time		** Suggested format (talks, panel discussion, etc.)
	* Suggested format (talks, panel discussion, etc.)		** Potential speakers, panels, or other activities
	* Potential speakers, panels, or other activities

	== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==		== [http://www.ibc2017.cn XIX International Botanical Congress], July 23-29, 2017, Shenzhen, China ==

Cooperl: /* Phenome 2017, Feb 10th to 14th, 2017 */

2016-12-01T21:20:05Z

Phenome 2017, Feb 10th to 14th, 2017

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	== Phenome 2017, Feb 10th to 14th, 2017==		== Phenome 2017, Feb 10th to 14th, 2017==
	http://www.phenome2017.org/#homepage		http://www.phenome2017.org/#homepage
	* DWS will attend- evo devo presentation		* DWS will attend- evo devo presentation, submitted abstract with BtSinn and Dario
	* ~~CM will attend and present~~ Planteome and ~~pheno~~-~~BLASTing~~		* LC submitted Planteome abstract and AM submitted Samara abstract- in dropbox folder
	* '''To be considered for a talk you must submit your abstract by November 17, 2016'''		* '''To be considered for a talk you must submit your abstract by November 17, 2016'''
	* January 9, 2017: Final deadline for abstracts to be in the online program and conference mobile app		* January 9, 2017: Final deadline for abstracts to be in the online program and conference mobile app

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-11-29T19:28:52Z

Planteome Ontology WG Zoom Meeting

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	* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/418727698		* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/418727698

	* Attendees:		* Attendees: BtSinn, DC, DWS, LC, PJ, AM, JE, GG,
	* Regrets: CM, BS		* Regrets: CM, BS

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-11-29T19:27:20Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 19:27, 29 November 2016
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	* Attendees:		* Attendees:
	* Regrets: CM,		* Regrets: CM, BS

	* Recordings:		* Recordings:
			** [[File:Ontology WG Meeting 11-29-2016 audio.m4a\|thumb\|Ontology WG Meeting 11-29-2016 audio]]
			** [[File:Ontology WG Meeting 11-29-2016 video.mp4\|thumb\|Ontology WG Meeting 11-29-2016 video]]

	=Agenda=		=Agenda=

Cooperl: /* Fruit types in the Plant Ontology */

2016-11-29T19:23:59Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 19:23, 29 November 2016
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	* [[File:Fruit heirarchy.png]]		* [[File:Fruit heirarchy.png]]

	Link to Google ~~doc~~: [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit ~~Revsions~~]		* Link to Google docs:
			** [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revisions]
			** [https://drive.google.com/open?id=0Bx1a3gacds0DTnJjcnZnSXBELUE Fruit images]

Cooperl: /* Updates: */

2016-11-29T18:11:21Z

Updates:

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	=Agenda=		=Agenda=
	==Updates:==		==Updates:==
	* Report from meeting:		* MAL:
	* [http://isas70.icrisat.ac.in/ International Conference on Statistics & Big Data Bioinformatics in Agricultural Research], ICRISAT, India, Nov 20-23rd, 2016		** Report from meeting: [http://isas70.icrisat.ac.in/ International Conference on Statistics & Big Data Bioinformatics in Agricultural Research], ICRISAT, India, Nov 20-23rd, 2016
	* International Crops Research Institute for the Semi-Arid Tropics- ICRISAT http://www.icrisat.org/		** International Crops Research Institute for the Semi-Arid Tropics- ICRISAT http://www.icrisat.org/
	* MAL will ~~attended~~		* MAL will be in Montpellier Dec 5th-16th. Breeding API meeting there week of Dec 12th


	==Fruit types in the Plant Ontology==		==Fruit types in the Plant Ontology==

Cooperl: /* Agenda */

2016-11-29T16:17:17Z

Agenda

← Older revision		Revision as of 16:17, 29 November 2016
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	=Agenda=		=Agenda=
			==Updates:==
			* Report from meeting:
			* [http://isas70.icrisat.ac.in/ International Conference on Statistics & Big Data Bioinformatics in Agricultural Research], ICRISAT, India, Nov 20-23rd, 2016
			* International Crops Research Institute for the Semi-Arid Tropics- ICRISAT http://www.icrisat.org/
			* MAL will attended

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-11-29T16:15:31Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 16:15, 29 November 2016
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	* Attendees:		* Attendees:
	* Regrets:		* Regrets: CM,

	* Recordings:		* Recordings:

Cooperl: /* Fruit types in the Plant Ontology */

2016-11-29T16:12:10Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 16:12, 29 November 2016
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	* [[File:Fruit heirarchy.png]]		* [[File:Fruit heirarchy.png]]

			Link to Google doc: [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revsions]


	* The main categories of fruits will be (see the associated trackers for each):		* The main categories of fruits will be (see the associated trackers for each):