Nov 14th, 2017 Ontology Working Group Meeting - Revision history

Cooperl: /* Request for Revisions to aroma TO:0000087 */

2018-02-10T21:07:42Z

Request for Revisions to aroma TO:0000087

← Older revision		Revision as of 21:07, 10 February 2018
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	* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.		* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
	* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma		* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
			* Aroma grouping term?, where to put it?
			* ''don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain''
			* Aroma is a physical object quality in PATO- PATO:0000058

	==Next Release==		==Next Release==

Cooperl: /* Request for Revisions to aroma TO:0000087 */

2018-02-10T20:33:53Z

Request for Revisions to aroma TO:0000087

@@ Line 27: / Line 27: @@
 * Proposed
-** Rename grain aroma trait (TO:0000087)
+** Rename grain aroma trait (TO:0000087)- ''done''
-** Move to be is_a grain quality trait TO:0000162
+** Move to be is_a grain quality trait TO:0000162 - ''done''
-** Make it part_of: fruit flavor trait (TO:0002694)
+** Make it part_of: fruit flavor trait (TO:0002694) - ''done''
 * Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
 * Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
-December Release
+* Food processing traits
+* Organoleptic traits- Integrate into TO at a high level?
 == Upcoming Events ==

Cooperl: /* Agenda and Notes */

2018-02-10T20:30:34Z

Agenda and Notes

← Older revision		Revision as of 20:30, 10 February 2018
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	=Agenda and Notes=		=Agenda and Notes=
	* Update on Changes to PECO		* Update on Changes to PECO- ''in progress''

	* Presentation of PhenoArche data management by INRA: Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.		==Presentation of PhenoArche data management by INRA==
			* Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
	* EA and MAL may be in Peru during the week - Lima is on eastern time zone		* EA and MAL may be in Peru during the week - Lima is on eastern time zone

	* Request for Revisions to aroma TO:0000087 (#424) ~~From PJ~~		== Request for Revisions to aroma TO:0000087==
	** http://~~browser~~.planteome.org/amigo/term/TO:0000087		* From PJ; See tracker ([https://github.com/Planteome/plant-trait-ontology/issues/424 #424])
	* Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.		* Current definition: aroma ([http://dev.planteome.org/amigo/term/TO:0000087 TO:0000087]): The aroma of the cooked/uncooked grains.
	** Currently aroma (TO:0000087) has dual parentage:		* aroma (TO:0000087) has dual parentage:
	** is_a fruit flavor trait (TO:0002694)		** is_a fruit flavor trait (TO:0002694)
	** is_a seed composition quality trait (TO:0000488)		** is_a seed composition quality trait (TO:0000488)
	*** ''This structure makes no sense.''		*** ''This structure makes no sense.''

			* Proposed
			** Rename grain aroma trait (TO:0000087)
			** Move to be is_a grain quality trait TO:0000162
			** Make it part_of: fruit flavor trait (TO:0002694)

	~~Proposed~~		* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
	~~Rename grain aroma trait (TO:0000087)~~		* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
	~~Move to be is_a grain quality trait TO:0000162~~

	~~Make it part_of:~~
	~~fruit flavor trait (TO:0002694)~~

	Comment from PJ:
	Needs ~~repositions~~ as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.

	Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma

Cooperl: /* Agenda and Notes */

2018-02-10T20:26:13Z

Agenda and Notes

← Older revision		Revision as of 20:26, 10 February 2018
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	* Update on Changes to PECO		* Update on Changes to PECO

	* Presentation of PhenoArche data management by INRA: Francois and Pascal are fully booked before end of the year so they propose the following dates:		* Presentation of PhenoArche data management by INRA: Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
	23, 25 janvier et 6 février.
	* EA and MAL may be in Peru during the week - Lima is on eastern time zone		* EA and MAL may be in Peru during the week - Lima is on eastern time zone

Cooperl: /* Agenda and Notes */

2018-02-10T20:25:53Z

Agenda and Notes

← Older revision		Revision as of 20:25, 10 February 2018
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	=Agenda and Notes=		=Agenda and Notes=
	~~==News~~:==		* Update on Changes to PECO

			* Presentation of PhenoArche data management by INRA: Francois and Pascal are fully booked before end of the year so they propose the following dates:
			23, 25 janvier et 6 février.
			* EA and MAL may be in Peru during the week - Lima is on eastern time zone

			* Request for Revisions to aroma TO:0000087 (#424) From PJ
			** http://browser.planteome.org/amigo/term/TO:0000087
			* Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
			** Currently aroma (TO:0000087) has dual parentage:
			** is_a fruit flavor trait (TO:0002694)
			** is_a seed composition quality trait (TO:0000488)
			*** ''This structure makes no sense.''


			Proposed
			Rename grain aroma trait (TO:0000087)
			Move to be is_a grain quality trait TO:0000162

			Make it part_of:
			fruit flavor trait (TO:0002694)

			Comment from PJ:
			Needs repositions as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.

			Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma



			December Release



			Food Ontology meeting:
			Involvement of industry and tech, informatics
			Full spectrum of production
			Agvoice company Bruce Rasa http://www.agvoiceglobal.com/
			Alexa technology,

			Food processing traits

			Organoleptic traits
			Integrate into TO at a high level?



			Next IC Foods meeting in March in Dublin, Ireland

			http://foodontology.github.io/foodon/

			https://github.com/FoodOntology/foodon


			Ask Matthew lange about coming to future meeting

			Phenoharmonis planned for mid-May 2018

Cooperl: /* Upcoming Events */

2017-12-04T18:38:08Z

Upcoming Events

← Older revision		Revision as of 18:38, 4 December 2017
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	* Phenoscape Hackathon in Dec- LC and AM will attend		* Phenoscape Hackathon in Dec- LC and AM will attend
	* Plant and Animal Genome meeting January 2018		* Plant and Animal Genome meeting January 2018
			* Phenoharmonis planned for mid-May 2018
	* ICBO 2018- in Corvallis, August 6-10th		* ICBO 2018- in Corvallis, August 6-10th

	Next meeting: Dec 5th		Next meeting: Dec 5th

Cooperl at 19:42, 1 December 2017

2017-12-01T19:42:05Z

← Older revision		Revision as of 19:42, 1 December 2017
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	* Connection details:		* Connection details:
	~~Hi there,~~

	~~Planteome Project is inviting you to a scheduled Zoom meeting.~~

	Topic: Planteome Ontology Working Group Meeting		Topic: Planteome Ontology Working Group Meeting
	Time: Nov 14, 2017 8:15 AM PST		Time: Nov 14, 2017 8:15 AM PST

Cooperl at 19:41, 1 December 2017

2017-12-01T19:41:34Z

← Older revision		Revision as of 19:41, 1 December 2017
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	== Upcoming Events ==		== Upcoming Events ==
	* Phenoscape Hackathon in Dec		* Phenoscape Hackathon in Dec- LC and AM will attend
	* Plant and Animal Genome meeting January 2018		* Plant and Animal Genome meeting January 2018
	* ICBO 2018- in Corvallis, ~~possibly end of~~ August		* ICBO 2018- in Corvallis, August 6-10th

	Next meeting: ~~Nov 28th~~		Next meeting: Dec 5th

Cooperl at 18:54, 14 November 2017

2017-11-14T18:54:19Z

← Older revision		Revision as of 18:54, 14 November 2017
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	Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533		Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533
	* Meeting Recordings:		* Meeting Recordings:
			** [[File:Ontology WG meeting audio 11-14-17.m4a\|thumb\|Ontology WG meeting audio 11-14-17]]
			** [[File:Ontology WG meeting video 11-14-17.mp4\|thumbnail\|Ontology_WG_meeting_video_11-14-17.mp4]]

	=Agenda and Notes=		=Agenda and Notes=

Cooperl at 23:37, 13 November 2017

2017-11-13T23:37:40Z

← Older revision		Revision as of 23:37, 13 November 2017
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	Topic: Planteome Ontology Working Group Meeting		Topic: Planteome Ontology Working Group Meeting
	Time: Nov 14, 2017 7:15 AM ~~Alaska~~		Time: Nov 14, 2017 8:15 AM PST

	Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533		Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533


	* Meeting Recordings:		* Meeting Recordings: