May 9th, 2017 Ontology Working Group Meeting - Revision history

Cooperl: /* Updates from NYBG */

2017-05-09T22:36:46Z

Updates from NYBG

← Older revision		Revision as of 22:36, 9 May 2017
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	* DWS out till May 15th		* DWS out till May 15th
	* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th		* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th
	** Brandon working on Fruit types paper and also one for periderm issues?		** Brandon working on Fruit types paper (and also one for periderm issues?)
	** Dario has been generating images for the fruit types- will add those to the dropbox		** Dario has been generating images for the fruit types- will add those to the dropbox
	** Ownership of Google docs needs to be transferred to Laurel		** Ownership of Google docs needs to be transferred to Laurel

	* Progress on the [https://docs.google.com/document/d/1rxh2KDz1-2skWkY75sIPTr2LBZ-XgHcKuEqnRNNifwA/edit?usp=sharing Branch/Axis downstream terms]		* Progress on the [https://docs.google.com/document/d/1rxh2KDz1-2skWkY75sIPTr2LBZ-XgHcKuEqnRNNifwA/edit?usp=sharing Branch/Axis downstream terms]
			** DC- these have been addressed, can make the edits in the PO? - '' these probably need to be reviewed together"


	** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])		** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])

Cooperl: /* Updates from NYBG */

2017-05-09T22:33:50Z

Updates from NYBG

← Older revision		Revision as of 22:33, 9 May 2017
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	** Dario has been generating images for the fruit types- will add those to the dropbox		** Dario has been generating images for the fruit types- will add those to the dropbox
	** Ownership of Google docs needs to be transferred to Laurel		** Ownership of Google docs needs to be transferred to Laurel

			* Progress on the [https://docs.google.com/document/d/1rxh2KDz1-2skWkY75sIPTr2LBZ-XgHcKuEqnRNNifwA/edit?usp=sharing Branch/Axis downstream terms]

Cooperl: /* Updates from NYBG */

2017-05-09T22:31:54Z

Updates from NYBG

← Older revision		Revision as of 22:31, 9 May 2017
Line 15:		Line 15:
	** Brandon working on Fruit types paper and also one for periderm issues?		** Brandon working on Fruit types paper and also one for periderm issues?
	** Dario has been generating images for the fruit types- will add those to the dropbox		** Dario has been generating images for the fruit types- will add those to the dropbox
			** Ownership of Google docs needs to be transferred to Laurel

Cooperl: /* Updates from NYBG */

2017-05-09T22:27:33Z

Updates from NYBG

← Older revision		Revision as of 22:27, 9 May 2017
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	=Agenda=		=Agenda=
	==Updates from NYBG==		==Updates from NYBG==
	* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th
	* DWS out till May 15th		* DWS out till May 15th
			* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th
			** Brandon working on Fruit types paper and also one for periderm issues?
			** Dario has been generating images for the fruit types- will add those to the dropbox



	** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])		** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])

Cooperl: /* Agenda */

2017-05-09T20:16:27Z

Agenda

← Older revision		Revision as of 20:16, 9 May 2017
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	==Progress on the Agro Ontology- (MAL)==		==Progress on the Agro Ontology- (MAL)==
			* Tabled for next meeting

			==Planteome Noctua==
			* In preparation for the Noctua workshop on June 4th, we will review the current version of the Planteome Noctua and test out features and functionalities.
			* Demo and test of Planteome Noctua instance: '''http://noctua-dev.planteome.org/'''
			** Link to [https://docs.google.com/document/d/1KYi1f53KCmPsLDBnz8fIosg4htkPoEHjeXZtj-QedgM/edit?usp=sharing Planteome Noctua SOP] (In progress)

			=== Planteome Noctua Issues===
			** Need list of people attending as they need to be added to the users.yaml file?
			** CM will give an overview and intro
			** Will we use the Planteome version for demo, and annotate example from plants?
			** Need to include agro and EO?
			** Attendees should be given a couple of papers before hand to read- specifc pathways
			** Justin will work on creating an OBO file with gene names for rice and Arabidopsis

	= Upcoming Meetings and Workshops=		= Upcoming Meetings and Workshops=

Cooperl: /* Ontology of Plant Stress (AM) */

2017-05-09T20:13:47Z

Ontology of Plant Stress (AM)

← Older revision		Revision as of 20:13, 9 May 2017
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	==Ontology of Plant Stress (AM)==		==Ontology of Plant Stress (AM)==
	*		* [[File:Brief OOPS overview AM 5-9-17.pdf\|thumbnail\|Brief_OOPS_overview_AM_5-9-17.pdf ]]

	==Progress on the Agro Ontology- (MAL)==		==Progress on the Agro Ontology- (MAL)==

Cooperl: /* Updates from NYBG */

2017-05-09T19:15:31Z

Updates from NYBG

← Older revision		Revision as of 19:15, 9 May 2017
Line 11:		Line 11:
	=Agenda=		=Agenda=
	==Updates from NYBG==		==Updates from NYBG==
	* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th.		* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th
	* DWS out till May 15th		* DWS out till May 15th
	** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])		** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])

Cooperl: /* Updates from NYBG */

2017-05-09T19:14:43Z

Updates from NYBG

← Older revision		Revision as of 19:14, 9 May 2017
Line 13:		Line 13:
	* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th.		* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th.
	* DWS out till May 15th		* DWS out till May 15th
	** Revisions to spikelet pedicel (~~document~~: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms]		** Revisions to spikelet pedicel (Link to Gdoc: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms])



	==Ontology of Plant Stress (AM)==		==Ontology of Plant Stress (AM)==

Cooperl at 19:13, 9 May 2017

2017-05-09T19:13:46Z

← Older revision		Revision as of 19:13, 9 May 2017
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	** [[File:Ontology WG Meeting audio 5-9-17.m4a\|thumb\|Ontology WG Meeting audio 5-9-17]]		** [[File:Ontology WG Meeting audio 5-9-17.m4a\|thumb\|Ontology WG Meeting audio 5-9-17]]
	** [[File:Ontology WG Meeting video 5-9-17.mp4\|thumb\|Ontology WG Meeting video 5-9-17]]		** [[File:Ontology WG Meeting video 5-9-17.mp4\|thumb\|Ontology WG Meeting video 5-9-17]]
	** http://wiki.planteome.org/index.php/File:Ontology_WG_Meeting_video_5-9-17.mp4

	=Agenda=		=Agenda=
	==~~Planteome Noctua~~==		==Updates from NYBG==
	* ~~In preparation for the Noctua workshop on June 4th, we~~ will ~~review the current version~~ of ~~the Planteome Noctua~~ and ~~test out features and functionalities~~.		* Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th.
	* ~~Demo and test of Planteome Noctua instance: '''http://noctua-dev.planteome.org/'''~~		* DWS out till May 15th
	** ~~Link~~ to [https://docs.google.com/document/d/~~1KYi1f53KCmPsLDBnz8fIosg4htkPoEHjeXZtj~~-~~QedgM~~/edit?usp=sharing ~~Planteome Noctua SOP~~] ~~(In progress)~~		** Revisions to spikelet pedicel (document: [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Pedicel and Related Terms]

	* Items mentioned during call:
	** TBA...

	~~==Updates==~~
	* Updates from NYBG:
	** Brandon will be leaving project as of May 19th, and Dario will be leaving on May 12th.
	**

	* Progress on the Agro Ontology- (MAL)		==Ontology of Plant Stress (AM)==
			*
			==Progress on the Agro Ontology- (MAL)==

	* Ontology of Plant Stress (AM)

	~~== Current work going on in PO==~~
	~~Link to pedicel document: https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing~~

	= Upcoming Meetings and Workshops=		= Upcoming Meetings and Workshops=

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2017-05-09T19:07:08Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 19:07, 9 May 2017
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	=Planteome Ontology WG Zoom Meeting=		=Planteome Ontology WG Zoom Meeting=
	* Date: Tuesday May ~~2nd~~, 2017		* Date: Tuesday May 9th, 2017
	* Time: 8:15am PDT (GMT-7)		* Time: 8:15am PDT (GMT-7)