Mar 21st, 2017 Ontology Working Group Meeting - Revision history

Cooperl: /* Update from George- Progress on AberOwl */

2017-04-06T17:43:19Z

Update from George- Progress on AberOwl

← Older revision		Revision as of 17:43, 6 April 2017
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	* Once they have the files with definitions, then they can build the PlantPhenome.net		* Once they have the files with definitions, then they can build the PlantPhenome.net
	* Definitions are available through the files or API....		* Definitions are available through the files or API....
	* CM: need a knowledge base ~~of germplasm~~

			* CM: need an ontology of germplasm or a or a knowledge base
			** Can we scrape them from GeneSys??

			* Planteome.owl needs to be updated
			* Purls for CO ontology files

	==Update from Justin E- Progress on Noctua==		==Update from Justin E- Progress on Noctua==

2017-04-06T17:41:10Z

Update from EA: CGIAR Big Data Platform

2017-04-06T17:40:32Z

Agenda

← Older revision		Revision as of 17:40, 6 April 2017
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	* JE is working on setting up a local http://noctua-dev.planteome.org/		* JE is working on setting up a local http://noctua-dev.planteome.org/
	* Not working correctly yet		* Not working correctly yet


			==Update from EA: CGIAR Big Data Platform==
			* [http://blog.ciat.cgiar.org/cgiar-platform-for-big-data-in-agriculture/ CGIAR Big Data Platform]

			* Communities of practice


	==Plans for publications==		==Plans for publications==

2017-04-06T17:38:07Z

Update from Justin E- Progress on Noctua

← Older revision		Revision as of 17:38, 6 April 2017
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	==Update from Justin E- Progress on Noctua==		==Update from Justin E- Progress on Noctua==
			* JE is working on setting up a local http://noctua-dev.planteome.org/
			* Not working correctly yet

	==Plans for publications==		==Plans for publications==

2017-04-06T17:35:43Z

Revisions to pedicel terms

← Older revision		Revision as of 17:35, 6 April 2017
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	==Revisions to pedicel terms==		==Revisions to pedicel terms==
	* [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Revisions to pedicel terms]		* [https://docs.google.com/document/d/1GeMKf0s-M58355hakqeN7Aaf72kHvGaTubfwOh9Pf9o/edit?usp=sharing Revisions to pedicel terms]


	* [[File:Pedicel hierarchy.png\|frameless\|Pedicel hierarchy]]		* [[File:Pedicel hierarchy.png\|frameless\|Pedicel hierarchy]]

	* [[File:Spikelet pedicel.png\|frameless\|Spikelet pedicel]]		* [[File:Spikelet pedicel.png\|frameless\|Spikelet pedicel]]

			* Discussion about the pedicel terms:

	==Update from George- Progress on AberOwl==		==Update from George- Progress on AberOwl==

2017-04-04T22:29:42Z

inflorescence (PO:0009049)

← Older revision		Revision as of 22:29, 4 April 2017
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	===inflorescence (PO:0009049)===		===inflorescence (PO:0009049)===
	Current def’n:		Current def’n:
	A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) distal to the most distal foliage leaf (PO:0009025) of a shoot axis and all of the flowers (PO:0009046) borne by those axes. Must have two or more flowers as parts.		* inflorescence (PO:0009049): A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) distal to the most distal foliage leaf (PO:0009025) of a shoot axis and all of the flowers (PO:0009046) borne by those axes. Must have two or more flowers as parts.

	Revised def’n:		Revised def’n:

2017-04-04T20:46:21Z

Revisions to pedicel terms

← Older revision		Revision as of 20:46, 4 April 2017
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	* [[File:Pedicel hierarchy.png\|frameless\|Pedicel hierarchy]]		* [[File:Pedicel hierarchy.png\|frameless\|Pedicel hierarchy]]






	* [[File:Spikelet pedicel.png\|frameless\|Spikelet pedicel]]		* [[File:Spikelet pedicel.png\|frameless\|Spikelet pedicel]]

2017-04-04T20:05:30Z

Update from George- Progress on AberOwl

← Older revision		Revision as of 20:05, 4 April 2017
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	* Once they have the files with definitions, then they can build the PlantPhenome.net		* Once they have the files with definitions, then they can build the PlantPhenome.net
	* Definitions are available through the files or API....		* Definitions are available through the files or API....
			* CM: need a knowledge base of germplasm

	==Update from Justin E- Progress on Noctua==		==Update from Justin E- Progress on Noctua==

2017-04-04T20:04:41Z

Update from George- Progress on AberOwl

← Older revision		Revision as of 20:04, 4 April 2017
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	* See: [http://aber-owl.net/ AberOwl]		* See: [http://aber-owl.net/ AberOwl]
	* Luke is rebuilding AberOwl and making a plant specific version of it.		* Luke is rebuilding AberOwl and making a plant specific version of it.
			* Need the list of plant-specific ontologies with definitions included
			* Allows for querying, indexing PubMed
			* Once they have the files with definitions, then they can build the PlantPhenome.net
			* Definitions are available through the files or API....

	==Update from Justin E- Progress on Noctua==		==Update from Justin E- Progress on Noctua==

2017-04-04T19:41:47Z

Update from George- Progress on AberOwl

← Older revision		Revision as of 19:41, 4 April 2017
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	==Update from George- Progress on AberOwl==		==Update from George- Progress on AberOwl==
			* See: [http://aber-owl.net/ AberOwl]
			* Luke is rebuilding AberOwl and making a plant specific version of it.


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			==Update from Justin E- Progress on Noctua==

	==Plans for publications==		==Plans for publications==