Dec 6th, 2016 Ontology Working Group Meeting - Revision history

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-12-06T18:59:48Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 18:59, 6 December 2016
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	* Recordings:		* Recordings:
			** [[File:Ontology WG Meeting audio 12-06-2016.m4a\|thumb\|Ontology WG Meeting audio 12-06-2016]]
			** [[File:Ontology WG Meeting video 12-06-2016.mp4\|thumb\|Ontology WG Meeting video 12-06-2016]]

	=Agenda=		=Agenda=

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-12-06T18:43:01Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 18:43, 6 December 2016
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	* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/146374357		* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/146374357

	* Attendees:		* Attendees: LC, AM, PJ, BtSinn, DC, MLP, MAL

	* Regrets:		* Regrets:

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T18:04:52Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 18:04, 6 December 2016
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	* septicidal capsule fruit (PO:0030093): A capsule fruit (PO:0030091) which dehisces through fruit septa (PO:0025268).		* septicidal capsule fruit (PO:0030093): A capsule fruit (PO:0030091) which dehisces through fruit septa (PO:0025268).
	** Synonym: septizide kapsel (exact, German), cápsula septicida (exact, Spanish), cápsula septífraga (exact, Spanish), septicidal capsule (exact), septifragal		** Synonym: septizide kapsel (exact, German), cápsula septicida (exact, Spanish), cápsula septífraga (exact, Spanish), septicidal capsule (exact), septifragal capsule (exact)
	capsule (exact)
	** Comment: Examples: dutchman's pipe (Aristolochia elegans) and black cottonwood (Populus trichocarpa).		** Comment: Examples: dutchman's pipe (Aristolochia elegans) and black cottonwood (Populus trichocarpa).

Cooperl: /* Planteome Ontology WG Zoom Meeting */

2016-12-06T18:03:15Z

Planteome Ontology WG Zoom Meeting

← Older revision		Revision as of 18:03, 6 December 2016
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	* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/146374357		* Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/146374357

	* Attendees:		* Attendees:
	* Regrets:		* Regrets:

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T18:02:18Z

Fruit types in the Plant Ontology

@@ Line 61: / Line 61: @@
 ** Comment: Examples: milkweed (Asclepias syriaca) and Carolina larkspur (Delphinium carolinianum).
+* loment fruit (PO:0030101): A legume fruit (PO:0030100) which is constricted between each seed (PO:0009010).
+** Synonym: gliederhülse (exact, German), lomento (exact, Spanish), lomentum (exact)
-legume fruit (PO:0030100):
+** Comment: Examples: some members of Fabaceae, including soybean (Glycine max).
-A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity, comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) which dehisce along two fruit valves (PO:0000033).
+''- Clarify "some members of the Fabaceae"- vague...''
 * The main categories of fruits will be (see the associated trackers for each):

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T17:55:50Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 17:55, 6 December 2016
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	** Synonym: porenkapsel (exact, German), cápsula porífera (exact, Spanish), poricidal capsule (exact)		** Synonym: porenkapsel (exact, German), cápsula porífera (exact, Spanish), poricidal capsule (exact)
	** Comment: Example: poppy (Papaver spp.).		** Comment: Example: poppy (Papaver spp.).
	** ''Do we need a term for pericarp pore? Is this really a pore? Maybe an opening? - look into...''		''** Do we need a term for pericarp pore? Is this really a pore? Maybe an opening? - look into...''

	* septicidal capsule fruit (PO:0030093): A capsule fruit (PO:0030091) which dehisces through fruit septa (PO:0025268).		* septicidal capsule fruit (PO:0030093): A capsule fruit (PO:0030091) which dehisces through fruit septa (PO:0025268).
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	* silique fruit (PO:0030106): A fruit (PO:0009001) which develops from a gynoecium (PO:0009062) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086), that dehisce along two fruit valves (PO:0000033), that separate from a persistent fruit replum (PO:0025267).		* silique fruit (PO:0030106): A fruit (PO:0009001) which develops from a gynoecium (PO:0009062) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086), that dehisce along two fruit valves (PO:0000033), that separate from a persistent fruit replum (PO:0025267).
			** Synonyms: schote (exact, German), silicua (exact, Spanish), silícula (exact, Spanish), silicle (exact), siliqua (exact), silicula (exact), silique (exact)
			** Comment: Examples: members of Brassicaceae, lyrate rockcress (Arabidopsis lyrata), mouse-ear cress (Arabidopsis thaliana), wild cabbage (Brassica oleracea), field mustard (Brassica rapa), and pink shepherd's purse (Capsella rubella).
			''** Add comment about gynoecium being multicarpellate ...''

			* follicle fruit (PO:0030105): A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity, comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) which dehisce along a single fruit valve (PO:0000033).
	~~Synonyms: schote (exact, German), silicua (exact, Spanish), silícula (exact, Spanish), silicle (exact), siliqua (exact), silicula (exact), silique (exact)~~		** Synonyms: balgfrucht (exact, German), folículo (exact, Spanish), follicetum (exact), pod (broad)
			** Comment: Examples: milkweed (Asclepias syriaca) and Carolina larkspur (Delphinium carolinianum).

	Comment: Examples: members of Brassicaceae, lyrate rockcress (Arabidopsis lyrata), mouse-ear cress (Arabidopsis thaliana), wild cabbage (Brassica oleracea), field mustard (Brassica rapa), and pink shepherd's purse (Capsella rubella).
	~~Multicarpellate ...~~


	follicle fruit (PO:0030105):
	A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity, comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) which dehisce along a single fruit valve (PO:0000033).


	Synonyms: balgfrucht (exact, German), folículo (exact, Spanish), follicetum (exact), pod
	(broad)
	Comment: Examples: milkweed (Asclepias syriaca) and Carolina larkspur (Delphinium carolinianum).

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T17:53:42Z

Fruit types in the Plant Ontology

@@ Line 12: / Line 12: @@
 ==Fruit types in the Plant Ontology==
 * Continued from [[Nov_29th,_2016_Ontology_Working_Group_Meeting]]
 * Link to Google docs:
 ** [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revisions]
@@ Line 37: / Line 36: @@
 ''** Add a couple more examples?''
+* septicidal capsule fruit (PO:0030093): A capsule fruit (PO:0030091) which dehisces through fruit septa (PO:0025268).
+** Synonym: septizide kapsel (exact, German), cápsula septicida (exact, Spanish), cápsula septífraga (exact, Spanish), septicidal capsule (exact), septifragal
 capsule (exact)
-Comment: Examples: dutchman's pipe (Aristolochia elegans) and black cottonwood (Populus trichocarpa).
+** Comment: Examples: dutchman's pipe (Aristolochia elegans) and black cottonwood (Populus trichocarpa).
-silique fruit (PO:0030106):
+* silique fruit (PO:0030106): A fruit (PO:0009001) which develops from a gynoecium (PO:0009062) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086), that dehisce along two fruit valves (PO:0000033), that separate from a persistent fruit replum (PO:0025267).

Cooperl: /* Agenda */

2016-12-06T17:50:33Z

Agenda

@@ Line 10: / Line 10: @@
 =Agenda=
 ==Fruit types in the Plant Ontology==
 * Continued from [[Nov_29th,_2016_Ontology_Working_Group_Meeting]]
+*
 * Link to Google docs:
 ** [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revisions]
@@ Line 20: / Line 18: @@
 [[File:Fruit hierarchy.png]]

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T01:09:59Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 01:09, 6 December 2016
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	==Fruit types in the Plant Ontology==		==Fruit types in the Plant Ontology==
			* Continued from [[Nov_29th,_2016_Ontology_Working_Group_Meeting]]

	* Link to Google docs:		* Link to Google docs:
	** [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revisions]		** [https://docs.google.com/document/d/1WV53zMVqyxZfovYZTu_WUHcxTicyCnpelvzlbQBbZgw/edit?usp=sharing PO Fruit Revisions]
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	[[File:Fruit hierarchy.png]]		[[File:Fruit hierarchy.png]]

Cooperl: /* Fruit types in the Plant Ontology */

2016-12-06T01:08:41Z

Fruit types in the Plant Ontology

← Older revision		Revision as of 01:08, 6 December 2016
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	** [https://drive.google.com/open?id=0Bx1a3gacds0DTnJjcnZnSXBELUE Fruit images]		** [https://drive.google.com/open?id=0Bx1a3gacds0DTnJjcnZnSXBELUE Fruit images]

	[[File:Fruit hierarchy.png~~\|thumbnail\|Fruit hierarchy~~ ]]		[[File:Fruit hierarchy.png]]