Dec 16th, 2015 Ontology Working Group Meeting - Revision history

Cooperl: /* Agenda: 5:30-7:30pm */

2015-12-16T21:27:44Z

Agenda: 5:30-7:30pm

← Older revision		Revision as of 21:27, 16 December 2015
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	** external involvement is key		** external involvement is key

	* Add an outreach page, ~~with links to community involvement tools (TermGenie)~~ (JE)		* Add an outreach page to Planteome site, (JE)
	** also with links to meetings and workshops and links to STEM ~~stuff~~		* Links to meetings and workshops and links to STEM
			* Also links to community involvement tools (TermGenie)??- ''we already have a

	==Updates on the data annotations: rice and cassava==		==Updates on the data annotations: rice and cassava==

Cooperl: /* Agenda: 5:30-7:30pm */

2015-12-16T21:10:41Z

Agenda: 5:30-7:30pm

← Older revision		Revision as of 21:10, 16 December 2015
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	=== Agenda: 5:30-7:30pm===		=== Agenda: 5:30-7:30pm===
	* see google doc for more precise details:		* see google doc for more precise details: https://docs.google.com/document/d/14z5zcNYe7LYWZHluoSPmZ25HJjk-eWf7fXoLzM1481Q/edit?usp=sharing

	* Dinner: no tables, so will do it at ~ 7pm - so that discussion can follow.		* Dinner: no tables, so will do it at ~ 7pm - so that discussion can follow.

Cooperl: /* Planning for PAG Workshop with CG Collaborators Monday Jan 11th */

2015-12-16T21:07:44Z

Planning for PAG Workshop with CG Collaborators Monday Jan 11th

← Older revision		Revision as of 21:07, 16 December 2015
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	==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==		==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
	* ~~PAG workshop (~~Monday Jan 11th 5:30- 7:30pm)		* Day and Time: Monday Jan 11th 5:30- 7:30pm
			** need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
			** will be a "working dinner", dinner being figured out
			** don't need to buy the AV equipment, will be provided

			* Need to finalize list of invited participants
			* 28 people confirmed (allowances for ~10 more)
			** few people have not confirmed
			** Send invites to other groups- DivSeek, plant phenotype project project (PPPP group) and the AgBioData group (LC)
			** There is a breeding API meeting scheduled at the same time, but it might be moving.
			* Need to get the agenda out before Xmas, so that people who confirmed early will get a quick reminder.

	* need a name- ~~"Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")~~		=== Agenda: 5:30-7:30pm===
	* will be a "working dinner", dinner being figured out		* see google doc for more precise details:
	* don't need to buy the AV equipment, will be provided

	*need to finalize list of invited participants
	** few people have not confirmed
	** There is a breeding API meeting scheduled at the same time, but it might be moving.
	** ~~want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.~~

	* ~~Agenda: 5:30-7:30~~		* Dinner: no tables, so will do it at ~ 7pm - so that discussion can follow.
	~~- 28 people confirmed (allowances for ~10 more)~~		** set up dinner around 6:30
	~~- invite the plant phenotype project people (PPPP group) and the AgBioData group~~
	~~- see google doc for more precise~~
	- Dinner: no tables, so ~~what time to~~ do ~~dinner?~~
	~~- 7~~- so that discussion can follow.
	- set up dinner around 6:30

	* APIs- still in a state of flux, but should be presentable by PAG		* APIs- still in a state of flux, but should be presentable by PAG
	~~- Summary~~ descriptions on how to access them from planteome.org		** Need a summary and descriptions on how to access them from planteome.org

	* Look to get others involved in the enrichment of the TO and other reference ontologies. Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.		* Look to get others involved in the enrichment of the TO and other reference ontologies. Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
	- external involvement is key		** external involvement is key

	* Add an outreach page, with links to community involvement tools (TermGenie)		* Add an outreach page, with links to community involvement tools (TermGenie) (JE)
	- also with links to meetings and workshops		** also with links to meetings and workshops and links to STEM stuff
	- and links to STEM stuff

	==Updates on the data annotations: rice and cassava==		==Updates on the data annotations: rice and cassava==

Cooperl: /* Planning for PAG Workshop with CG Collaborators Monday Jan 11th */

2015-12-16T20:56:54Z

Planning for PAG Workshop with CG Collaborators Monday Jan 11th

← Older revision		Revision as of 20:56, 16 December 2015
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	==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==		==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
	* PAG workshop (Monday Jan 11th 5:30- 7:30pm)		* PAG workshop (Monday Jan 11th 5:30- 7:30pm)
	~~- don't need to buy the AV equipment, will be provided~~
	- need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")		* need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
	- will be a "working dinner", dinner being figured out		* will be a "working dinner", dinner being figured out
			* don't need to buy the AV equipment, will be provided

	- need to finalize list of invited participants		*need to finalize list of invited participants
	- few people have not confirmed		** few people have not confirmed
	- There is a breeding API meeting scheduled at the same time, but it might be moving.		** There is a breeding API meeting scheduled at the same time, but it might be moving.
	- want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.		** want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.

	* Agenda: 5:30-7:30		* Agenda: 5:30-7:30

Cooperl: /* Planteome Ontology WG Zoom Meeting: */

2015-12-16T20:55:00Z

Planteome Ontology WG Zoom Meeting:

← Older revision		Revision as of 20:55, 16 December 2015
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	* Connection details: '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''		* Connection details: '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
	* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.		* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.


	* [[File:Ontology WG meeting 12-16-2015 video.mp4\|thumb\|Ontology WG meeting 12-16-2015_video]]		* [[File:Ontology WG meeting 12-16-2015 video.mp4\|thumb\|Ontology WG meeting 12-16-2015_video]]
	* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a\|thumb\|Ontology_WG_meeting_12-16-2015_audio]]		* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a\|thumb\|Ontology_WG_meeting_12-16-2015_audio]]



	==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==		==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
	* PAG workshop (Monday Jan 11th 5:30- 7:30pm)		* PAG workshop (Monday Jan 11th 5:30- 7:30pm)
	- don't need to buy the AV equipment, will be provided		- don't need to buy the AV equipment, will be provided
	- need a name		- need a name- "Planteome collaborators workshop, PAG 2016" (It's not all curators coming, so it's not a "curator workshop")
	"Planteome collaborators workshop, PAG 2016"		- will be a "working dinner", dinner being figured out
	~~- "working dinner"~~
	~~- dinner being figured out~~
	- not all curators coming, so it's not a "curator workshop"
	- need to finalize list of invited participants		- need to finalize list of invited participants
	- few people have not confirmed		- few people have not confirmed

Cooperl: /* Planning for PAG Workshop with CG Collaborators Monday Jan 11th */

2015-12-16T20:53:35Z

Planning for PAG Workshop with CG Collaborators Monday Jan 11th

@@ Line 12: / Line 12: @@
 ==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
-* Agenda
+* PAG workshop (Monday Jan 11th 5:30- 7:30pm)
+  - don't need to buy the AV equipment, will be provided
 ==Updates on the data annotations: rice and cassava==

Cooperl: /* Updates on the mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice */

2015-12-16T20:50:24Z

Updates on the mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice

← Older revision		Revision as of 20:50, 16 December 2015
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	* Agenda		* Agenda

	==Updates on the mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==		==Updates on the data annotations: rice and cassava==


			mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==

	==Revisions to the Trait Ontology- biochemical branch and other changes==		==Revisions to the Trait Ontology- biochemical branch and other changes==


	==Next meeting Dec 29th, 2015==		==Next meeting Dec 29th, 2015==

Cooperl at 20:48, 16 December 2015

2015-12-16T20:48:47Z

← Older revision		Revision as of 20:48, 16 December 2015
Line 10:		Line 10:


	==Updates==
			==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
			* Agenda

			==Updates on the mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==
			==Revisions to the Trait Ontology- biochemical branch and other changes==


			==Next meeting Dec 29th, 2015==

Cooperl at 20:42, 16 December 2015

2015-12-16T20:42:01Z

← Older revision		Revision as of 20:42, 16 December 2015
Line 6:		Line 6:


			* [[File:Ontology WG meeting 12-16-2015 video.mp4\|thumb\|Ontology WG meeting 12-16-2015_video]]
			* [[File:Ontology_WG_meeting_12-16-2015_audio_only.m4a\|thumb\|Ontology_WG_meeting_12-16-2015_audio]]


	==Updates==		==Updates==

Cooperl: /* Planteome Ontology WG Zoom Meeting: */

2015-12-16T20:37:48Z

Planteome Ontology WG Zoom Meeting:

← Older revision		Revision as of 20:37, 16 December 2015
Line 3:		Line 3:
	Time: 8:15am PST (GMT-8)		Time: 8:15am PST (GMT-8)
	* Connection details: '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''		* Connection details: '''Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/664666919'''
	* Attendees: LC, AM, PJ, DWS~~, BS~~		* Attendees: LC, AM, PJ, JE, MAL, EA, DWS.





	==Updates==		==Updates==