AmiGO2 install - Revision history

Elserj: /* SOLR */

2016-11-02T18:46:25Z

SOLR

← Older revision		Revision as of 18:46, 2 November 2016
Line 32:		Line 32:
	</pre>		</pre>

	Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started):		Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started). Pick either the systemd or init.d version, depending on which init system is being used:

	systemd version:		systemd version:

2016-11-02T18:45:47Z

SOLR

← Older revision		Revision as of 18:45, 2 November 2016
Line 34:		Line 34:
	Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started):		Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started):

	~~====~~systemd version~~====~~		systemd version:
	<pre>		<pre>
	[elserj@floret extensions]$ cat /etc/systemd/system/solr.service		[elserj@floret extensions]$ cat /etc/systemd/system/solr.service
Line 51:		Line 51:
	</pre>		</pre>

	~~====~~init.d version~~====~~		init.d version:
	Add the init.d script as outlined [http://stackoverflow.com/questions/2150767/how-to-start-solr-automatically on this page]		Add the init.d script as outlined [http://stackoverflow.com/questions/2150767/how-to-start-solr-automatically on this page]

2016-11-02T18:43:55Z

SOLR

← Older revision		Revision as of 18:43, 2 November 2016
Line 34:		Line 34:
	Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started):		Now that it seems to be starting up fine, daemonise it so that it runs at a service at boot (Note that any service needs to be okayed by Chris before started):

			====systemd version====
			<pre>
			[elserj@floret extensions]$ cat /etc/systemd/system/solr.service
			[Unit]
			Description=Apache Solr
			After=syslog.target network.target remote-fs.target nss-lookup.target

			[Service]
			Type=simple
			WorkingDirectory=/data/www/planteome/SOLR/example
			ExecStart=/usr/bin/java -jar /data/www/planteome/SOLR/example/start.jar
			Restart=on-failure

			[Install]
			WantedBy=multi-user.target
			</pre>

			====init.d version====
	Add the init.d script as outlined [http://stackoverflow.com/questions/2150767/how-to-start-solr-automatically on this page]		Add the init.d script as outlined [http://stackoverflow.com/questions/2150767/how-to-start-solr-automatically on this page]

2016-11-02T18:18:51Z

SOLR

← Older revision		Revision as of 18:18, 2 November 2016
Line 12:		Line 12:
	<pre>		<pre>
	cd /data/www/planteome_dev		cd /data/www/planteome_dev
	git clone https://github.com/~~geneontology~~/amigo.git amigo		git clone https://github.com/planteome/amigo.git amigo
	</pre>		</pre>

2016-03-01T21:07:13Z

Run amigo2 installer

2016-02-18T22:32:18Z

Run amigo2 installer

← Older revision		Revision as of 22:32, 18 February 2016
Line 252:		Line 252:
	CGI::Application::Dispatch		CGI::Application::Dispatch
	CGI::Application::Plugin::Forward		CGI::Application::Plugin::Forward
			CGI::Application::Plugin::Session
			CGI::Application::Plugin::TT
			CGI::Application::Plugin::Redirect
			DBI
			Data::FormValidator
			Graph::Directed
			XML::Parser
			XML::XPath
	</pre>		</pre>

2016-02-17T01:17:00Z

Notes from older install that may still be relevant

← Older revision		Revision as of 01:17, 17 February 2016
Line 264:		Line 264:
	At this point Amigo2 appears to be working.		At this point Amigo2 appears to be working.

	==Notes from older install ~~that may still be relevant~~==		==Notes from older install==
	At one point from doing an older install, it needed a missing yui-compressor, so need to get that installed. (May no longer be relevant)		At one point from doing an older install, it needed a missing yui-compressor, so need to get that installed. (May no longer be relevant)
	<pre>		<pre>
Line 287:		Line 287:


	~~Again, earlier install had a missing perl module. Installed the following via cpan:~~
	~~<pre>CGI::Application::Plugin::Forward</pre>~~
	~~<pre>CGI::Application::Dispatch</pre>~~
	'''This page will be updated as I progress.'''		'''This page will be updated as I progress.'''

2016-02-17T01:16:32Z

Run amigo2 installer

← Older revision		Revision as of 01:16, 17 February 2016
Line 250:		Line 250:
	WWW::Mechanize		WWW::Mechanize
	LWP::Protocol::https		LWP::Protocol::https
			CGI::Application::Dispatch
			CGI::Application::Plugin::Forward
	</pre>		</pre>

2016-02-17T01:07:20Z

Run amigo2 installer

← Older revision		Revision as of 01:07, 17 February 2016
Line 239:		Line 239:
	<pre>./node_modules/.bin/gulp install</pre>		<pre>./node_modules/.bin/gulp install</pre>

	There may be some missing perl packages here. I had to install <pre>Config::YAML</pre>		There may be some missing perl packages here. I had to install <pre>Config::YAML
			Template
			Date::Parse
			Clone
			URI::Escape
			JSON::XS
			Data::UUID
			File::Type
			FreezeThaw
			WWW::Mechanize
			LWP::Protocol::https
			</pre>

	===Load ontologies===		===Load ontologies===

2015-12-23T01:57:14Z

Run amigo2 installer

← Older revision		Revision as of 01:57, 23 December 2015
Line 238:		Line 238:
	===Run amigo2 installer===		===Run amigo2 installer===
	<pre>./node_modules/.bin/gulp install</pre>		<pre>./node_modules/.bin/gulp install</pre>

			There may be some missing perl packages here. I had to install <pre>Config::YAML</pre>

	===Load ontologies===		===Load ontologies===