View source for Data storage and AmiGO2 Working Group

=Goals and Objectives:=
== Aim-3: Develop an online informatics portal and data warehouse for ontology-based, annotated plant genome data and plant genomes. ==

===3.1 Planteome Web Portal Development===
* Drupal portal will host the AmiGO browser, the ontology database developed by the PO and the GO consortium, and a BioMart
* Transition to AmiGO 2.0 with new features

===3.2 Planteome Data Warehouse Development===
* Novel data warehouse for storing both the ontologies and annotation data based on [http://nosql-database.org/ NoSQL] (e.g. MongoDB, http://www.mongodb.org, and Apache™ Hadoop®, http://hadoop.apache.org)
* Integrate the MapReduce algorithm to increase scalability and performance
* Investigate using HDF ([http://en.wikipedia.org/wiki/Hierarchical_Data_Format Hierarchical Data Format]),  as a storage format for any numerical or sequence-based data.

=Participants=
* Jaiswal Lab (OSU, BPP): Justin Elser
* Mungall Group (Lawrence Berkeley National Laboratory): Chris Mungall (Co-PI), Seth Carbon
* Zhang Lab (OSU, EECS):'' Eugene Zhang (Co-PI), Botong Qu (CS Ph.D. student)

=Data storage and AmiGO 2 Working Group Meetings:=
* Data storage and AmiGO 2 call 1-30-15
** Who: PJ, CM, Seth, EZ, LC, JP, JE
- Discussion of the planned transition to the AmiGO 2.0 platform

- JE is working on installing SolR database - View details and progress reports here: [[AmiGO2_install]]

* Data Storage and AmiGO2 call 2-18-15 [[Media:Data_Storage_2-18-15.mp4 ]]
** Who: JE, JP, EZ
- Further discussion of AmiGO2 progress and overview of AmiGO2 interface


Relevant links:

https://github.com/geneontology/amigo

Demo: http://amigo.geneontology.org/

http://amigo2.berkeleybop.org/ - dev server